NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334919_000025

Scaffold Ga0334919_000025


Overview

Basic Information
Taxon OID3300034001 Open in IMG/M
Scaffold IDGa0334919_000025 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 15HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)176536
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)129 (75.88%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000265Metagenome / Metatranscriptome1420Y
F014784Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0334919_000025_136363_137184F014784AGGAMYYSVEYVTRAGGESIDMAWMEERAQKLREFFGLRADAELIAPESSQLELQAEVAEGLAGFNIEWHVIPSAQAVPLDDAYMARLYPRPARDFTKAHGLGASYRERITQGHRQHQGHLIGVETTQKPGYLPGTQQFYGTAYGHDASADPFAPYMGRAGMMNGTRYDHNYLSLREFISVVSVDWRARSILPAGYRVTVCPPAVFNLVGTVFHPEWSNTETLELGFYRDEQGNATCYAVGSNAPGDFSYINEVEGEAEWSLMGFRVALVPDESSRQ
Ga0334919_000025_83420_83653F000265GAGGMAETRGLQATPEIKAEWVRAYKFFQQAPGDAYDKKKDRTERINYVARMMNLTRKQAKRRIKNYEAWQRNIKKGLVNP
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