NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334920_001485

Scaffold Ga0334920_001485


Overview

Basic Information
Taxon OID3300034002 Open in IMG/M
Scaffold IDGa0334920_001485 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 16HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7794
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020517Metagenome223Y
F079676Metagenome / Metatranscriptome115Y
F081092Metagenome / Metatranscriptome114Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334920_001485_3202_3444F091480AGTAGGMRDLHVYVEPVGLGARADRKAFYSRRADGPYYRWLYAEGQGGWLYSRVSLDRPTLRMLCVAPWEAVPAALRSRLGEHYLE
Ga0334920_001485_3484_3714F020517AGGCGGVSGQKPVGPDVKHYLVKRRNEILPKRRSWNEVQAELRQKGTDADESMLFRGIVTEDGTEYRDMYADSRTQVTEHTA
Ga0334920_001485_3935_4096F081092GGCGGVSGYDDFIERLEGALADDEGREDFLEYLEGLTSEGRAEILAEADRREEKTELT
Ga0334920_001485_4294_4515F079676GGAGMPAETAEHGARIKAGDRVRALDGAYKGRVGTALRVVTSRDEGRTSRTILVSFPSGGADYLDADALEKAETADE
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