Scaffold Ga0334936_000006

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334936_000006

Scaffold Ga0334936_000006

Overview

Basic Information
Taxon OID	3300034007 Open in IMG/M
Scaffold ID	Ga0334936_000006 Open in IMG/M
Source Dataset Name	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	323724
Total Scaffold Genes	264 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	205 (77.65%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334936_000006_104385_104618	F000265	GGAG	MPELRGKQATEDVKQEWVRAYEHYQAAPGVPHNKKLDRTERINYVADKMHLTRKQAKRRVKNFEAWQRNIKKGLITP

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