NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334936_000006

Scaffold Ga0334936_000006


Overview

Basic Information
Taxon OID3300034007 Open in IMG/M
Scaffold IDGa0334936_000006 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 32SMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)323724
Total Scaffold Genes264 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)205 (77.65%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000265Metagenome / Metatranscriptome1420Y

Sequences

Protein IDFamilyRBSSequence
Ga0334936_000006_104385_104618F000265GGAGMPELRGKQATEDVKQEWVRAYEHYQAAPGVPHNKKLDRTERINYVADKMHLTRKQAKRRVKNFEAWQRNIKKGLITP

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