NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334942_000218

Scaffold Ga0334942_000218


Overview

Basic Information
Taxon OID3300034008 Open in IMG/M
Scaffold IDGa0334942_000218 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 38SMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28323
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004033Metagenome / Metatranscriptome456Y
F020065Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0334942_000218_19227_19403F020065N/AMTKKSQIQQIKEGRAMRERVWSGRLQPFGPKSNLSTKNAVDLSTVPSSAEEKYNGGRE
Ga0334942_000218_26272_26730F004033AGGMKKIVLGLALLLFATAGFSAERATTPELTPPDNGTEWLRLSSTEKLFWAIGYSQGYREALDKIDVTAGPTSPCASLAVRTERQTSTSGKLSGFELVSSLERFYADPANTVIPIGSAIRIALLQAGGKDQATVQELIDTARVLGQQAAARPRS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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