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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034012 Open in IMG/M |
| Scaffold ID | Ga0334986_0001129 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23264 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (52.94%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010682 | Metagenome | 300 | Y |
| F048284 | Metagenome | 148 | Y |
| F051095 | Metagenome | 144 | Y |
| F077254 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334986_0001129_11179_11469 | F077254 | N/A | MDPYAQAAFGFAKAYQMNMQAADEQRRANQPSTNAFAQGVTDEETDYRFSPTPQAPVPPTEEYTGVQSEGGTVLDQSNGTLLSRAKQKASRYLQGA |
| Ga0334986_0001129_15373_15699 | F051095 | AGG | MQPHFEKALTVFFEDPEASIACFSGSITESLTHPRGLRKVIPYLIKASVVGFMLATFVSPAIEERFKLTKNEAIATSFIIGYAGIRILAAAERLAEKEIERRIGKNEN |
| Ga0334986_0001129_15764_16567 | F010682 | GGAG | MVYTPQTNWKYDKNLYHPIQSGPQRTGDNLNLTNTYLTISSGYVTPSGINQTWYGVLDEGADFGLIPVGPPNLSGYFTTDWKAVPPAPSGYWTNYENVLPHSSGLLDTYVGFRAQGLYRVANATVQTAYGPRPGLRNFGTHIWYGEQIPDNQNYDPFKTPSSNDSSLDGGGITGGGVTHPATRSPTLTNPTNDTSGSRAAWVYHYPIYCQSFTETRYTGVPGQMGIPVRNSYRGKSLRYVPNYGSVYGVLGEGVRNMVRTFSPGTKI |
| Ga0334986_0001129_2641_3138 | F048284 | N/A | VFSKADYELAARILGLPVPETPAEQAAATPVTAEVLRRFGQGRAPMPGMEQNGFYTGATHSLNGYPDNTMPMQHAQLASRLRTEPERPHQDAYLMELIQSLEPDEFELVIALLEQLADQEEQESDRLSSQRPLEYDMPNLGSNYSVLNAPASNSIEPSRAYQPLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |