NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0039600

Scaffold Ga0334986_0039600


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0039600 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3058
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024782Metagenome / Metatranscriptome204Y
F059659Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0039600_2288_2458F024782N/AMIEKSIERLRAYNKWRTGEDDRTMDEVGIQPSQLTADIKTVCDELEKLISIYASRN
Ga0334986_0039600_749_1336F059659AGGAGGMGMYNSVDCHCPLPMPEDPKGYTGSHGFQTKDFECALDVYIIDKDGQLLIERRDTEWIEGDPNGEGFLSKIGHLKTIKTWLEPLTNTCTIQFYDFIDSNKTDYDYFITYEAVFINGKMSSVKIINFEANENAKRKIRDAEFAKKNKENYQFRQTWKYKYFVKPYNRSVSFIFFKTIKVLSFLSTTLYKIERNIRI
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