NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334986_0046449

Scaffold Ga0334986_0046449


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0046449 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2780
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014590Metagenome261Y
F023834Metagenome208Y
F026864Metagenome196Y
F068766Metagenome124N
F073256Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0046449_1184_1486F026864N/AVELHQPKGSNNTNYKEEKMMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLSTGQATNWRTALGEALSKIELPTDKVDKTINDVIKEGVEDEGV
Ga0334986_0046449_1830_1994F073256AGGMNLQEVDTIQELKQWVEENMPGARLTEDSAGDIVIHTGLHSTMGGYLHEREEDE
Ga0334986_0046449_3_236F014590GGAGGMRTRHLQLVTHEHSVTIKTRSDVSSPYGPVKAGLTTSQTTQEARLTELLNSLENVVDNLNFKSFTVYDTLVIATENLR
Ga0334986_0046449_611_865F068766AGGAGGMTEDNVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ
Ga0334986_0046449_858_1031F023834GAGGMSEPTVDYWRAKAELCRDLALIQIEDEATEKEAGMNLMRMTYALSMVDTFNEGGEDD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.