NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0093798

Scaffold Ga0334986_0093798


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0093798 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1810
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002267Metagenome / Metatranscriptome576Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0093798_219_920F002267GGGGGMSGIMMSMLNNVQAAVASGPTLVYDLDAANYSAVPVTGSTVAGTGAFTITVANAGSSISWQSDSGGVFRKSNATGTDVMYGGPNYVTGQSYSVFMAYKRIATSSGRLLNTQSEASKDWLMGLYNGNPDTFYPNYAVNLPGSGADLVWHFGWATWNTTTSLGQLYTATSSQPTGVAYAVTNAGGGGFNQLRMFSRSAGTEVQTADIGFVKVYNGVLNLATVQSLYATYKARFGY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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