NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0000317

Scaffold Ga0334991_0000317


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0000317 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48716
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (19.63%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027848Metagenome193Y
F032189Metagenome / Metatranscriptome180Y
F041198Metagenome / Metatranscriptome160Y
F082703Metagenome / Metatranscriptome113Y
F099307Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0000317_28077_28385F082703N/AMTNYKSFTPKVDLKRRLVLTRFNAGIKDSNSFCYQITRITKTGSVDKRFKTLYAFGTDDFDSVKTFSHSSTGEEVKIFKKPFKSVFGVKEKNDPKIVWNSIK
Ga0334991_0000317_31414_31785F099307N/AMIEILKDCLIVDFPVVPGKGFTEWLLKSNNPKVGPYLGEDRFKDMLVKVENESLQEILDILLKEPLADYFWYTYKEHGSRLTYSIPSPEIQAVPAIREGDALRVDKEKMKVFLRDIKIEKILQ
Ga0334991_0000317_387_650F027848N/AMIIFNTIKKAEHYVKFCNKNHDYYHNGYDWSEYSTYIDGDLVKVRNAGDGCGCGCDNHLYNYTTIIGRIKAHDTKTIRSSKLNNLGI
Ga0334991_0000317_44210_44392F032189GAGMSMGESVSERPSYRYENKEYLLKTIMNQLGMTEDDLENEPSWIKAKVRESNIDKVLDTQN
Ga0334991_0000317_650_907F041198N/AMKVKCINTSRYNKYDNLPLTVGKVYDVIKIVNIPFNSRRYDDYTGPFYELVNDLGEVSGYTDECVRALTLDELREIKLEELGIDN
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