Basic Information | |
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Taxon OID | 3300034013 Open in IMG/M |
Scaffold ID | Ga0334991_0000317 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 48716 |
Total Scaffold Genes | 107 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (19.63%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F027848 | Metagenome | 193 | Y |
F032189 | Metagenome / Metatranscriptome | 180 | Y |
F041198 | Metagenome / Metatranscriptome | 160 | Y |
F082703 | Metagenome / Metatranscriptome | 113 | Y |
F099307 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334991_0000317_28077_28385 | F082703 | N/A | MTNYKSFTPKVDLKRRLVLTRFNAGIKDSNSFCYQITRITKTGSVDKRFKTLYAFGTDDFDSVKTFSHSSTGEEVKIFKKPFKSVFGVKEKNDPKIVWNSIK |
Ga0334991_0000317_31414_31785 | F099307 | N/A | MIEILKDCLIVDFPVVPGKGFTEWLLKSNNPKVGPYLGEDRFKDMLVKVENESLQEILDILLKEPLADYFWYTYKEHGSRLTYSIPSPEIQAVPAIREGDALRVDKEKMKVFLRDIKIEKILQ |
Ga0334991_0000317_387_650 | F027848 | N/A | MIIFNTIKKAEHYVKFCNKNHDYYHNGYDWSEYSTYIDGDLVKVRNAGDGCGCGCDNHLYNYTTIIGRIKAHDTKTIRSSKLNNLGI |
Ga0334991_0000317_44210_44392 | F032189 | GAG | MSMGESVSERPSYRYENKEYLLKTIMNQLGMTEDDLENEPSWIKAKVRESNIDKVLDTQN |
Ga0334991_0000317_650_907 | F041198 | N/A | MKVKCINTSRYNKYDNLPLTVGKVYDVIKIVNIPFNSRRYDDYTGPFYELVNDLGEVSGYTDECVRALTLDELREIKLEELGIDN |
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