Basic Information | |
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Taxon OID | 3300034013 Open in IMG/M |
Scaffold ID | Ga0334991_0018652 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4109 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F009265 | Metagenome / Metatranscriptome | 320 | Y |
F009679 | Metagenome / Metatranscriptome | 314 | Y |
F009746 | Metagenome / Metatranscriptome | 313 | N |
F029096 | Metagenome | 189 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334991_0018652_1863_2387 | F029096 | GAG | MDTMAETRQTITVRPDISDYRGLLKALSAMDKEAQLQLKNDVYSLSAWTAQGIQQAGFAHPIYPRQAAIVAQTVRPARDRIPTVYIGGGKGRVSGGANAGQLLFGNEFGGDRNAFGNLNVFPNGGYRFPPRTAREGRGNTGYWIFPTLKAMQPEIKRRWFATVNKVMDNWARTS |
Ga0334991_0018652_2475_2765 | F009265 | AGG | MQYTVKTKQGNNYIVDAESTWLWIEIERELGLTVTQAVQKISEGSLDVLTCMLYKAAKAQGKTQLPNQRVWVENEFEGFELVDDNPKENLQTDLSE |
Ga0334991_0018652_3196_3567 | F009746 | GAGG | LGNLATYRSTLAATLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALANLETLIFSVTDLLANNISFLGGWSQPTVQQIGNADMLISQLNIEMVTTN |
Ga0334991_0018652_3560_4099 | F009679 | N/A | LGIGDIYADPIVQAVADSAENIILSYLIFDDVSIAGVSLTSNVARFYCYDNTFVVGQALTVSKCGAPFDGSRTVTKVGYDEYGVTFFEAAITNADITKRSVIPNGRAVLTSQAALYDTTPEVREAAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG |
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