NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0018652

Scaffold Ga0334991_0018652


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0018652 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4109
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009265Metagenome / Metatranscriptome320Y
F009679Metagenome / Metatranscriptome314Y
F009746Metagenome / Metatranscriptome313N
F029096Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0018652_1863_2387F029096GAGMDTMAETRQTITVRPDISDYRGLLKALSAMDKEAQLQLKNDVYSLSAWTAQGIQQAGFAHPIYPRQAAIVAQTVRPARDRIPTVYIGGGKGRVSGGANAGQLLFGNEFGGDRNAFGNLNVFPNGGYRFPPRTAREGRGNTGYWIFPTLKAMQPEIKRRWFATVNKVMDNWARTS
Ga0334991_0018652_2475_2765F009265AGGMQYTVKTKQGNNYIVDAESTWLWIEIERELGLTVTQAVQKISEGSLDVLTCMLYKAAKAQGKTQLPNQRVWVENEFEGFELVDDNPKENLQTDLSE
Ga0334991_0018652_3196_3567F009746GAGGLGNLATYRSTLAATLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALANLETLIFSVTDLLANNISFLGGWSQPTVQQIGNADMLISQLNIEMVTTN
Ga0334991_0018652_3560_4099F009679N/ALGIGDIYADPIVQAVADSAENIILSYLIFDDVSIAGVSLTSNVARFYCYDNTFVVGQALTVSKCGAPFDGSRTVTKVGYDEYGVTFFEAAITNADITKRSVIPNGRAVLTSQAALYDTTPEVREAAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
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