NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0000378

Scaffold Ga0334985_0000378


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0000378 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33751
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (80.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F003377Metagenome / Metatranscriptome490Y
F021516Metagenome218Y
F102618Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0000378_18198_18500F002540GGAGGMPAYEATPAELEQYGSKLTIWQQLALLQAWSPLIGYGQRFINEADPYKRSIIVSDASEWLASKTNAQADDQLVRLLGDLLKTKQGEALVRWCLLQVEAVR
Ga0334985_0000378_20576_20818F003377GGAGGVTDQAKETLFGIIERWGFPTLVAIACGWVLRADVLLPLVEEHRAFVKSLSETQREISKAVSEQTRLLYALQPRATEQQEN
Ga0334985_0000378_29060_29299F021516GGAGMPKIVFTRAWRGYRKGQVAELPGGISTQLLAQRVAVEDNQPSLIETAALEHDVETADATPKRRGRRAVSKPDSTDAASR
Ga0334985_0000378_8430_8672F102618AGGAGMMTNESSPAENEYLAAVAGLSEQTLSPAFKKSEPAVGDFVSGRTAGRYWSGRVEWVNDRGEICVNTDGSWVYVPMADITH
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