Basic Information | |
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Taxon OID | 3300034018 Open in IMG/M |
Scaffold ID | Ga0334985_0000378 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 33751 |
Total Scaffold Genes | 61 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (80.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002540 | Metagenome / Metatranscriptome | 550 | Y |
F003377 | Metagenome / Metatranscriptome | 490 | Y |
F021516 | Metagenome | 218 | Y |
F102618 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334985_0000378_18198_18500 | F002540 | GGAGG | MPAYEATPAELEQYGSKLTIWQQLALLQAWSPLIGYGQRFINEADPYKRSIIVSDASEWLASKTNAQADDQLVRLLGDLLKTKQGEALVRWCLLQVEAVR |
Ga0334985_0000378_20576_20818 | F003377 | GGAGG | VTDQAKETLFGIIERWGFPTLVAIACGWVLRADVLLPLVEEHRAFVKSLSETQREISKAVSEQTRLLYALQPRATEQQEN |
Ga0334985_0000378_29060_29299 | F021516 | GGAG | MPKIVFTRAWRGYRKGQVAELPGGISTQLLAQRVAVEDNQPSLIETAALEHDVETADATPKRRGRRAVSKPDSTDAASR |
Ga0334985_0000378_8430_8672 | F102618 | AGGAG | MMTNESSPAENEYLAAVAGLSEQTLSPAFKKSEPAVGDFVSGRTAGRYWSGRVEWVNDRGEICVNTDGSWVYVPMADITH |
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