NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0001752

Scaffold Ga0334985_0001752


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0001752 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17312
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (48.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007030Metagenome / Metatranscriptome359Y
F011216Metagenome / Metatranscriptome293Y
F022396Metagenome / Metatranscriptome214Y
F053148Metagenome / Metatranscriptome141N
F102858Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0001752_17111_17311F011216N/AVNANKKVSKTPRTDRQPVVTVAFQHFVKAGFAKQLERQLAGANKRIKELELKEAELQDLKKWLEGR
Ga0334985_0001752_3333_3575F102858GGAMKLTDEQLSEALSVSEEHPVLKAMGQLIDDTLRDEVLNAILPSLSAEDRAYNSGRAAAIKDLIAQISALRNGRELTSGQF
Ga0334985_0001752_490_744F022396AGAAGMNVGSNRQLAGEYGGTYISSASGTVTGNWQTIHALEITILGATASNITNFPAGVTLQAGDELPGVWTSITVSNGSIVAYNRKYA
Ga0334985_0001752_8263_9051F007030AGGAMTTTKAESPQMEDPTEQPTQAGTRPSIHVSLYAYGGISAACMMSWVDLTATFARSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQLDHDIEFTAADVIRMAELAHQHQATVCIPYPCRTLPPRPALRPKAEHLQALKHQVNDAECAAELVPITMFASGCLAIPRKCLLATLDALEGSGVQSQYRIDWCEDVRVERFPTLWMPLAMESMPGKLEYLSEDYAAAVRMTLAGVKHLSMKPRKQLNHWGEFPFSFAPYAG
Ga0334985_0001752_9048_9374F053148N/AMIVTNTTKLLMEAPHLVKIGVQRGWLSYPKDMAFKEDGTPDPVIQVEPEFTEQRHTPDLARKAYILRDRGLSLNDVATACQVPRGSVVYLISKGHELYLASQRKDIEP
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