NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0003568

Scaffold Ga0334985_0003568


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0003568 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12599
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (43.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F046374Metagenome / Metatranscriptome151N
F066790Metagenome / Metatranscriptome126N
F078719Metagenome / Metatranscriptome116Y
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0003568_149_310F066790N/AMLSDLMQRVRDMFKPYTLEDFICDADPKDYKDIQRLEAVWHNYQDRKLFNNCY
Ga0334985_0003568_3088_3348F046374GAGMAKTFGSLKSNKLDMLDKLTMGKFAGCRICDIIADDFEYLIWLNKQGFVNFTAPVMSDLLARAGFKEAEEHYKNEIEPWENEDVPF
Ga0334985_0003568_4405_4734F038245AGGAMKIYFGNANEDLFSDGLFALGDNQFYYGVEHGTNAGGLDEVVIFDGCKRKLPIHIQAIPELIAALQEVQKVDEAVKRAQELTERAESKTKGYATKLWHDHFEVDFDTAE
Ga0334985_0003568_4738_5130F045760GGAGMSSASKSKQAYAALYKSSTRWATNRKIKLTRLLKQQPNNEQIKDALANIKYRRHTPNSKTVWSHDNIRVAKLFKEFTGRASADLFSSNPKVQAAALAYRPDGDKLKVIEGKVNFSLGARAHDSKGNLVWK
Ga0334985_0003568_5121_5384F078719AGGMEIIEIYILFALTTGISSCILFLAPAINMAKELEIQNSFTENTWLSYATYITISTIFAPFTVLPIFIPSFAVRYKLGLRRAVLESQT
Ga0334985_0003568_5456_5728F099303N/AMNFLEFTYTKADGTQSKRAVVPLVNPTKFVEGIDVSQMSEDEFAVFCREFSALKSAQHEQTMAVLEQFDLKHNYRRFIPEQMSDITTDHV

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