NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0003745

Scaffold Ga0334985_0003745


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0003745 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12328
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F026858Metagenome / Metatranscriptome196Y
F041080Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0003745_1669_2007F008808N/AMRNKPKDCPECGEQFDNVFDATDHLLEDDEEFDPSLVLPNGYRLLIGSLLRCMYRYADEPEQIKDITQSTYMTLFTAETSPSTVVEVIEDMIVDSSMVGIDDELKRLLADGE
Ga0334985_0003745_2393_2803F001515AGGAMTNKSSFDLDFGFGRKGEQLVDELLTGARTVEVKRDRKWAKTNNLYIETECFFKKIEGWGPSGLGVTEASYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNISKGYLITVDDLMSATRLYKKAMADELATN
Ga0334985_0003745_2784_3494F001531AGAAGGMNWQRIEPWEFVIAHVASEYKRKFNIVEIEDIKLALYEWFNEHPNKLDEWEKIGEKDAKNLLYRSLRNQALDFCQKFKAKNLGYETSDLYYYEPEVVEALLPAVLRQEWGVTHKLNLGRPGRPSAPAEGGNLSAMMIEIESAYRRLSTEDKRILFLRYAESMDYKEISNFLSLNSDDAARMRGNRAVKRLVAKLGGFRPYLDKDTPDNKGEVENDIVEGDQATDYSEGDETSSDEL
Ga0334985_0003745_5979_6242F041080GAGGMSTSTILNLAEELRVIADEISFNAMDTSSDFPKRGTIVKALPAQNRFKAKSMWVSLGDGTYKHLTGSKGLTTNHSRLDGYTEVIFQA
Ga0334985_0003745_8483_8683F026858GAGGMTADNLLLDLAPREVEVIRLALRQAQEAHRSNGFLILAQEVMVLRSKISDAILDARANGKPVGVSK

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