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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034018 Open in IMG/M |
| Scaffold ID | Ga0334985_0003745 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12328 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001515 | Metagenome / Metatranscriptome | 679 | Y |
| F001531 | Metagenome / Metatranscriptome | 676 | Y |
| F008808 | Metagenome | 327 | Y |
| F026858 | Metagenome / Metatranscriptome | 196 | Y |
| F041080 | Metagenome / Metatranscriptome | 160 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334985_0003745_1669_2007 | F008808 | N/A | MRNKPKDCPECGEQFDNVFDATDHLLEDDEEFDPSLVLPNGYRLLIGSLLRCMYRYADEPEQIKDITQSTYMTLFTAETSPSTVVEVIEDMIVDSSMVGIDDELKRLLADGE |
| Ga0334985_0003745_2393_2803 | F001515 | AGGA | MTNKSSFDLDFGFGRKGEQLVDELLTGARTVEVKRDRKWAKTNNLYIETECFFKKIEGWGPSGLGVTEASYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNISKGYLITVDDLMSATRLYKKAMADELATN |
| Ga0334985_0003745_2784_3494 | F001531 | AGAAGG | MNWQRIEPWEFVIAHVASEYKRKFNIVEIEDIKLALYEWFNEHPNKLDEWEKIGEKDAKNLLYRSLRNQALDFCQKFKAKNLGYETSDLYYYEPEVVEALLPAVLRQEWGVTHKLNLGRPGRPSAPAEGGNLSAMMIEIESAYRRLSTEDKRILFLRYAESMDYKEISNFLSLNSDDAARMRGNRAVKRLVAKLGGFRPYLDKDTPDNKGEVENDIVEGDQATDYSEGDETSSDEL |
| Ga0334985_0003745_5979_6242 | F041080 | GAGG | MSTSTILNLAEELRVIADEISFNAMDTSSDFPKRGTIVKALPAQNRFKAKSMWVSLGDGTYKHLTGSKGLTTNHSRLDGYTEVIFQA |
| Ga0334985_0003745_8483_8683 | F026858 | GAGG | MTADNLLLDLAPREVEVIRLALRQAQEAHRSNGFLILAQEVMVLRSKISDAILDARANGKPVGVSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |