NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0026835

Scaffold Ga0334985_0026835


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0026835 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4428
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F009685Metagenome / Metatranscriptome314Y
F018162Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0026835_1156_1287F009685GGTGGMSDEYVDSVLAEAQRLLWGGSETENIEAHNLISKLIKDRMQHS
Ga0334985_0026835_1834_2070F000263N/AMVNAGVNGLDIMHGELKNLMLIAEQDLAEALEQETKSEEAMDSMVRTECEGRLDILVELYKLTYDLSFAIDEKEKQNV
Ga0334985_0026835_3922_4248F018162AGGMLGRLADAVIVARPRWTDSSYATRIAISQIVADQWNMETGWGLHVNEIGDNEHKIAIIDWDQQTFSLHEQADYRDESNKIRGMKNEAIFTMDLAAFCEKYALENILVN
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