NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0035749

Scaffold Ga0334985_0035749


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0035749 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3764
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003542Metagenome / Metatranscriptome480Y
F005090Metagenome / Metatranscriptome412N
F011392Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0035749_2153_2536F003542N/AMNTMLKNVKNPVQFDYDLFDSKIGYDSVNKKYLIRVYDYLVDSMDNKPAPTWSGIMRKMLGDNPNKCVPSSYYSSVRRCLKEIGVCYFDSTKRCMVKGRNWDRFVSDEDWNWFIMRTGSCEYSTIIK
Ga0334985_0035749_2555_3145F011392N/AMNLSIKELNELIYSLGITAHKGMFVNKDINESLLEKFYSELNSKIAEEAIDEEVESDTYYVSNEEADEDFRSTLKQDAQRYEASHMTTSFPMVDPFTSDSEDYDNHLSKLKTRGYITQALLDYVDKKGAVSHGDLETYYKIITGGSNSFSHILDNLRTPYKNRKTQRYIAKEGKRYSEAKYVIKVANPSNWVIVDC
Ga0334985_0035749_3167_3745F005090N/AMKKKMKFVWCGVKFELPVECLRTTDYWGKKLDNPYIYIGRKECPAIAKQFMKVKYPKLLVWGSSQTFANGNSASVDVCNADGSDLDMGSKEWNEINSFIRQMCGGKYDGWSESYEYGEPGKTDNGTKLEFGTKYLSVNNKAPFGTWPDVVRMLKGMMAGEYVWGPLSLEKAIEKVRDYKVTEPTIKKALELI
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