Basic Information | |
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Taxon OID | 3300034018 Open in IMG/M |
Scaffold ID | Ga0334985_0047475 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3196 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009003 | Metagenome / Metatranscriptome | 324 | Y |
F036096 | Metagenome | 170 | Y |
F042339 | Metagenome | 158 | Y |
F069698 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334985_0047475_185_454 | F009003 | N/A | MKAKDKAWQLYSNYFDIVEGESQEGQLGAVHYKAINCALYCVDEALANAPDDIVNDFEGTGEYYSVKAYYMHVKNEILKLNAAKNNKVS |
Ga0334985_0047475_2436_2762 | F069698 | N/A | MDIQPRDIITIIGGAVSLTGLYYALKRDVVKVSTALGKVESYHKREVTMLGDSIKETKEEFNTKLNVMKEEQNKAIDKLEKKIDVIAAQNLTISTNLAELAGFIRGTK |
Ga0334985_0047475_2765_3052 | F042339 | N/A | MLYWYGTAQEIDSLYQLERLKVTYYAKITGIQAASYETLAEIYANKQAIEKAIATEKDTEIKDLKKRNRRLIITNTAMTLGITGLAFSTIYFAIL |
Ga0334985_0047475_798_1019 | F036096 | N/A | MKATLTFDLREDQHAFDCAVNGVKYFDTLYEVQQHLRSLEKYQDLTQEQYDIVGKIREWLASELLDAGIADKF |
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