NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0047475

Scaffold Ga0334985_0047475


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0047475 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3196
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F036096Metagenome170Y
F042339Metagenome158Y
F069698Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0047475_185_454F009003N/AMKAKDKAWQLYSNYFDIVEGESQEGQLGAVHYKAINCALYCVDEALANAPDDIVNDFEGTGEYYSVKAYYMHVKNEILKLNAAKNNKVS
Ga0334985_0047475_2436_2762F069698N/AMDIQPRDIITIIGGAVSLTGLYYALKRDVVKVSTALGKVESYHKREVTMLGDSIKETKEEFNTKLNVMKEEQNKAIDKLEKKIDVIAAQNLTISTNLAELAGFIRGTK
Ga0334985_0047475_2765_3052F042339N/AMLYWYGTAQEIDSLYQLERLKVTYYAKITGIQAASYETLAEIYANKQAIEKAIATEKDTEIKDLKKRNRRLIITNTAMTLGITGLAFSTIYFAIL
Ga0334985_0047475_798_1019F036096N/AMKATLTFDLREDQHAFDCAVNGVKYFDTLYEVQQHLRSLEKYQDLTQEQYDIVGKIREWLASELLDAGIADKF
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