NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334985_0248143

Scaffold Ga0334985_0248143


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0248143 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1144
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008184Metagenome / Metatranscriptome337Y
F083920Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0248143_1_270F008184GGTGGMPAPYTDLFNEALDDLSATLTAVTGLRVVNDPTKLVPNCVFITAPSFTTIAGNGNIVRMDYPIKIVGSGPAGLPVLREILQITALVLGSS
Ga0334985_0248143_270_908F083920AGGCGGMATYLTASKQLLNNYACISTLEPTDIQVGDTIVVASIGAPFNGTFTVLSCPQYEYIGIDSTTGEWTFNENVPRANQVLYACTGDAVEYSAFYTGTVSFTPTCTWVTVANLVTYLGVSITNPSDDYTLATQAVSAGNQFCSRRRAEASYNDNLSTAPSGDVLLGTIMYCAALWRSRGSLENVFASFDNMGTAPQQSMTPIVKQLLGIDRPAVA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.