NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0296582

Scaffold Ga0334985_0296582


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0296582 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1014
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010669Metagenome / Metatranscriptome300Y
F075671Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0296582_3_218F075671N/AMKEICELLNELDAGREKFFIDRRTKVNGVITLHTPQEEIEKLFVKQLVTLTKLDCKCQFVEQILAAVIRLKE
Ga0334985_0296582_473_1012F010669N/ASEDDLTDPSDSEDSNMGISETHWPSDPSEVKCRIHAYVAHEQEILAELLNELESEVQTNSENIIVERIKRCFRCIDDIIEYATQFLKQARLIEMRDFTGFYYEIENDAKQTIRQALTIVSTLRRGNLFHLAPSVKGLVIELDYIRILVSRKTLEQVEETLEEYGARRTHTLREIEKLFP
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