NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0305801

Scaffold Ga0334985_0305801


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0305801 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F002357Metagenome / Metatranscriptome567Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0305801_337_933F002357N/AMFRSDLSVISHDPEKGFILIQATIWRDSKDAAPAVSNVAFGSRETYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESNPSFKEKLESRQNMYGKPGSKSAQIETILRDSFAADKKEPEPVAWSVGDVVAEIGAAIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECPPKWAKLTANGKWYFEGGE
Ga0334985_0305801_3_161F002162N/AMPNYDYMCDGEGSLIVLDLPMDHKIPHCQVCNKPLRRVFTAVPSIFKGTGWAG
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