NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0368882

Scaffold Ga0334985_0368882


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0368882 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)872
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000571Metagenome / Metatranscriptome1016Y
F026882Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0368882_1_552F026882N/AKTAVDQLRDKFDLERIGLTAALNAATDEETKLRLKAQLAILDNNEALAKKLLAEMEGTKATVELTTQFYALSEATKALLTSFGVSPSQIGPGGTIIDGAGGRIGNLADTSINNPNFASSAEGMQLGLALGFTPGSRTNGAAPQEIIVTVNTSAGGDRLSQAIAESIQIATRNGYSTVPAGQGF
Ga0334985_0368882_552_872F000571AGCAGGMTVPVINAIINFSTGPSFAQAMIFDEGRLDFNVIANSADVIVDVSNQVNRIETNRGRTALSDQFQTGSLTLRIVDQNGDFNPQNVTGPYYNLLTPMKKVQITATFNN
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