NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334998_0004230

Scaffold Ga0334998_0004230


Overview

Basic Information
Taxon OID3300034019 Open in IMG/M
Scaffold IDGa0334998_0004230 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11317
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006106Metagenome / Metatranscriptome381Y
F011216Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0334998_0004230_2008_2442F006106N/AMARKEKEALQVERGEIEKPKAKIGRPRKVVPIEDRKKALRAAEIGIPLERVAILCGFPSGNAGPWHAYLKANPDFAQELERARLEGELDMSCVVRTAGPGWQGSAWLLERTRGYVARAQLEHTGKGGKELSVSGALLGAFGGSK
Ga0334998_0004230_8772_8966F011216AGGAGGVKKPISKTPRTDRQPFVTVAFTRFVKAGFARQLERQLAGANKRIKELEAKEAELQDLKKWLEGR
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