Scaffold Ga0334998

Basic Information
Taxon OID	3300034019 Open in IMG/M
Scaffold ID	Ga0334998_0024819 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034019 Open in IMG/M

Scaffold ID

Ga0334998_0024819 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4364
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4364

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F025437	Metagenome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0024819_1161_1580	F025437	GAG	MQMRPFELRQLKVSKEQYFARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFEALEQELNKLNEVVAELSKYKELYLTLKRTFDEF
Ga0334998_0024819_1571_1801	F010908	GAGG	MKQILSPFQKYECFSVDGTDYLVVDYTIIQDKDDNLVEWASEMKFKRLSDHKHFTMPITKIITNHKEGRAKHCKCK
Ga0334998_0024819_1798_2127	F009202	N/A	MKRLRLMYPSDDSHDLYIREKQLMLAGTAMWLAQQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANAKLRIDSEQMIYEIQRLQGIIEDSL
Ga0334998_0024819_3123_3560	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTVKIQRANAFGGGGYTQSAPSATSFAAKTDDRSASIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGASSAPASHTEHFANRNDPF
Ga0334998_0024819_3748_4107	F009600	N/A	LKSYKVVVTKVPSLNAFYASRHWTVRKKAKDLHSDEVLAQLYAYDCEQITDVKITCRVNYRYDIDNSIMAVKFALDAFKTWGGVKDDSRKYVKSLKMVHDTTITKDTAEITFTGLLVSE
Ga0334998_0024819_4104_4361	F011218	N/A	MSSKPLAQQAKEAKQQQESMQYYTNPAKRRKIDFILEECATLMSNCEATYQARQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334998_0024819

Overview

Ecosystem & Geography

Associated Families

Sequences