NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334998_0039615

Scaffold Ga0334998_0039615


Overview

Basic Information
Taxon OID3300034019 Open in IMG/M
Scaffold IDGa0334998_0039615 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3345
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005740Metagenome / Metatranscriptome391N
F013403Metagenome / Metatranscriptome271Y
F088747Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0334998_0039615_2170_3345F013403N/ATFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAIDGIRSFIIARRSFTDWGNTPISGEMTPIVENDQTNLLWASSAVVFDNRLLMTSQPRFNSEGVIHKAISVLDMELITSMRKKAPPAWSGIWTGLNILQLVKTENAYGDACFAIARGSDDTIQIWEITKSERFDMNLSATPKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDELEGDVSFNVTYRPDQYPGWIEWIDFAECATVTQCLDLCPITNFKAQYRPKMRFPTPSDLPCNATISTPARNLYEVQVMLTIMGYCRIKSLRVHAYDIQESSVGECRTAFPACTPLDVCDVNPLTYSSE
Ga0334998_0039615_388_1359F005740GAGMKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGSYGRFTVCTVDGCITWPRSIETIEAVADCCGTGSVRNQWYEFQETGFGLLSGCNPCAGKQLVDRGTVVSYRDMSGGINSYIRVYPGDASDVGKTITLQGYDSNGQWIRTQSGGAWIDGEKLTLALPYVQSSKKFTALTGVIREATNTASRLYEFNQTIFAEIDLAVYDPDETLPQYRRSFWTGRNSDSCTQTVTVIGKMRHINATTVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0334998_0039615_3_371F088747AGGAMAIGVPAAILGGAAISGLGSLFGGLFGGKRPKVPELKPIDFAAEQRQAIQQNIAALQPATELSQKTTAAEQSQLEAQLRRVIPGYDQLVQQAGANIGAALRGEISPEVSAQVQRSTAGRALSG

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