NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0000139

Scaffold Ga0335005_0000139


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0000139 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54537
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (76.39%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Associated Families12

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F002653Metagenome539Y
F002933Metagenome / Metatranscriptome519Y
F014143Metagenome / Metatranscriptome265Y
F027163Metagenome195Y
F028486Metagenome191Y
F033000Metagenome178Y
F048177Metagenome148Y
F053127Metagenome141N
F061792Metagenome131Y
F093270Metagenome106N
F093754Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0000139_27189_27521F027163GGAMLFESLQTTCHSGTPTYTMPYSQQVISAVKKAPKTLGNQLGRWAVHHDFSAIKIAKVTGASRQSVYNWFNGGEVFVAYRPSVEAILKILQASSTGDEAWRRTCKAFNLKT
Ga0335005_0000139_31076_31414F093754AGGAGMGKVKNTVTLTATEAALARKLGISAQVYAQARKQQPVTMTTFNPNNDPVYSIPLSQLVNLWRAKYGDTWIDVSELDDDFWSDASARLHKNKKMEELNHHSDNSPWARLKEDA
Ga0335005_0000139_31430_31741F053127N/AMEKMSTTKERYQKGERQYARISVSKTRAQTVRMQESQTTLLSDIPTARLIDLWVARWGHDWVDLVEVTEDPFYKDAYNRMRREGELEVHFLTDRSKYVCRNPK
Ga0335005_0000139_35022_35303F002653AGAAGMSEAMSQEELEHRINKMSDEEQAHFKLLIYKLVMCYGEGNAQGVVIIGRAEDAFAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN
Ga0335005_0000139_36737_37300F093270AGGAMPDIQSALRSAINAWEPTPTGQQLKEKLMQNRPVFEVQNNVTRVTFDYIKLHPGTTSTAASRDLAKHGFKESSVTALMAQFVRAGLAVRDNNHGYRVTVDEYTPMKASAKYAKKVKAPTKVKPATTNDHKRPLATAGDGIAALHPEATSKRVVNTIVFGKPPEEVIKHMNVIQARELYDYLKKMFGG
Ga0335005_0000139_37318_37476F014143AGGMKTKYLTHVRRIFSTYDAPPETIRSYQRQWVRSIRRLGDKWLVARQVQRLDI
Ga0335005_0000139_40818_41798F061792AGGAGMAYVCKNYDEAVGTFAMRGAVRSSAWQPNERPLDPKPRSEHRLIEGSNEYGKYFDVKLYQTVMARFYEPKVVDGKRVERRLYMGHSSQTSQQFMRHTLRVDLGVNVDWRDHTTHADELIIMPIYTKAFMVDGDRDTPFSLDAVFVDGLLDPTQSEHTKHYRLVADKDVRQFKAKVAAHFEPYIMLAQMRMPEFKAECKLDYKYGQAFGGEGYNREYYMAIQEMWNDPEPRQQDIDVFFEMCQSAYNIIASKRGADQEDFHIQGNWYSRSQTTSSIDDLKKPIEMVEFRRAILDRIQKYVGSNSLKKPEEVKQFPRNSEYPRSNIHT
Ga0335005_0000139_41804_42223F028486GGAGMGYRSDVAYVIKFDDIETRDNFVTLMLAKNEPPITQAINECEYGYKHDPIITFKQESVKWYDSFEDVQAHHQLMKDAVLIYGKKGGKYRFISVGEDGAQVCNEDDDDGDLWDYITTTHAVNTSFPTIPTGESTSTLEQE
Ga0335005_0000139_43776_44327F033000AGCAGGMTLESKNCKACRPKRKPPTKLSAKEIHNRVQTGDMNVLVAKHLREKQAQDEHNKQAMAARKRWLKVWRVELRTALAPITREIASARKAWEYAKDKGYVDKAEFYFRYHAILKHEKAHTEYSYMTNPRRPQSARWADYLHPNVFAIVREMWAGLPPIFKESKIPLLITYRPEMGITEGEKNGDN
Ga0335005_0000139_4604_4912F048177N/AMHQFLNVGDTHDGHAHVFDHITLLAAGSVIMKHDNGEQDFTAPHLIVTPKGVVHQFIAKEPNTIFCCIHAIRDGSTVDDVASQDITPEQAFELMTHYPLTQG
Ga0335005_0000139_5010_5297F000332GGAGMRWLILLLLLGLVGATAKNGCHVREFWSIAWTIHNPSERHQQMSIWLTNNVRFCRSQDLTVIWNNLSEWAGTADSAELRTKVIHGYKDALEREKK
Ga0335005_0000139_5367_5606F002933GGAMIPPLNKWYPMVQPGGEPTKTYALERRAERLQEEYAQALKMKKAKDKINDLEFELYVKKAERNQLRLEIFTNRKLDIYV
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