NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0000367

Scaffold Ga0335005_0000367


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0000367 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35036
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (21.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069833Metagenome / Metatranscriptome123Y
F093295Metagenome106N
F099304Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0000367_12028_12333F099304N/AMKHTIQFVSELTEAEVRQLLFDIYERVPITGEDLSYAALPDKITRYVNEASRLSSLEEVVTQYIVEECCNGNIGVQDPINFLLASHRMLRHNIHEVWKEEY
Ga0335005_0000367_13265_13783F093295N/AMIKRIFQDLDECILHTTVNNDPGQTHVEFMLPEDVHTYRTIIRPCAKDLFAYYNDLIGKENVYILTTATREYAEALNRLGEFGLDYAHIFTREDIQQYKISFGYGGEGVMKMPIADKDNVLIDNLPPRYNCDKMDMMGIVTKNYHQTPEYYGNNLNDEGFFENIKKFLKDRL
Ga0335005_0000367_17460_17852F069833N/AMNASMRIYDKMNQQLYRKVGRKYVPETDPYALDGLREGWWLVKVAPGSTSIRQQVYPSRSEISAAARDKEDELIKIIREASEARPSKRPLTPEALADWQAFIAKHGEQFNTLEYPSIQENAEKIIEALLK
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