NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0000394

Scaffold Ga0335005_0000394


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0000394 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34077
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (27.08%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008936Metagenome325Y
F024717Metagenome204Y
F025680Metagenome200N
F033329Metagenome177N
F034061Metagenome175N
F059603Metagenome133N
F060610Metagenome132Y
F065376Metagenome127Y
F065768Metagenome127N
F070850Metagenome122Y
F100269Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0000394_10786_11442F065376N/AMNAVNIENLSEFYKALNSTEMLRAQSMIEGAPSIIEDKLSYDMSAESIKAANDAIKHIETNRKMVTLPLDTYKKSVMEVERDATAPLKAYIEQRKQMMIDYSNDLERKKAEADAKIAQEAADALMSASSSDVSNIFATFTDATTTTTLELDHTKNIRITKKAEIVGEVDWMTLLWTLMQAEMFDVQELLRKLPKAMEITNIAEIRGIEIVERKTQAIR
Ga0335005_0000394_12554_13201F100269N/AMASVRSETIYLGAIIVLLFLLLKTCSDGVQADYRLKHTIYEDSVLIASQRKVIAQGSSDAAKQAQQIAELEVKVKNASEVVKIETRTIIKTQIKLGDTVMVQGKPYIQLPKPFLKTTDWYTIGGMINRLGWLQLDSISIPAKFTYAVGDTMRTGFVNRLLKKKDTVVRLRVDNPNVQVVGLENIYIKQDKKWHQTTAFKVGVGVLIGVAAVSAVK
Ga0335005_0000394_13906_14382F060610N/AMDDGRDSTYTTIDDGCVVGLGCKVHTHHHTIHIEPQVVYKSMEKFTIFGKQYCTNQWGQTFEIAADEPVPELKPMQQFYASDTIQPSTSAFLLAPKPEAKIIIKPRTEYAEYKPTMDAPVMGMLLTFTIYLTVQWAWSSMGAWNNLYSELTTCLRSSS
Ga0335005_0000394_18886_19347F024717N/AMATPKEISDRINALFSDWNSGFTPLSFAVQDMRREMYIRIFGIDTGRGRNQAGNFLPTVPYSAAYAKIKAKNGKPPLELTGFLKRSFATDQTTVITEGFDTAIYTVADEAGKVAGLEKLYGTIFKPTAEEQSRMLQLHADLLVEQIANQISKP
Ga0335005_0000394_19347_20393F034061N/AMCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNAANIDTLVGAGKYTGIRVTIDPNTESFLNFYLSNFKIDIYTMNTPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMVPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGTDVISSKAKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLSVSPNQRVNTTVSINVGSKPFATADANDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
Ga0335005_0000394_1_573F025680N/AMKYIKGLKGLLRSFSGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGGEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSGLGIDPLMPLLTMSPEDFQTLWEYNLVQQRNLKESL
Ga0335005_0000394_22730_23680F008936N/AMASFEELVKNKIKLLENVPEELATAAERAQRDAWRKLSPLLAEMDVDVDGNIAQTEDNIRRIGLITEELNKVLAGGEYRDAVQSFLGSIDEGIQLTDDIAKKIDSTFEPNNVQRQLLAISKQNAINAFFGSGLRERVTQPFLEQLTANVAARAPLREAVKALQGVIEGTDTTDGRLLANVRTTAGTAQAIADRSYAAAVNEELGIEYFQYLGGEIPTTRPFCEHREGEIYHRKEIEAWGNGENSAGINDIRNGTWDGRIDGTDSRSIFTFVGGWNCRHFLVPVIKQRVPASVIARAEAEGYATPPRPRGGAEALTA
Ga0335005_0000394_26188_27141F070850N/AMTEEATQTTQSITPTTGVVLLAFGKPQYYWAAYNLAFSIRKHSPNVNITVLFDDPLKGISHCQDFMQYINNIGSIDSDDIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAIALKDIQPMIDELAQSGKHYVSHTVGYHTIDKGRDFKEMQWAWADKMWAHFNLLPSYVMPAINSSMQWIVKGSEAEAIYRTAKDLYFNNPIPIKELRMKWGGGQPDELYMNVALAIRGIDPALKQYTPNNGSEGGMIHFAMQRGLSFEKITENYYLQSYYGGAGFTPIFYINWLDRMLNADFKAIGKRHIYLISRIAQNKYADGKR
Ga0335005_0000394_4040_4300F059603GAGMELTTEQKIIKTMNEWYPIEGKIVDGCVTYHSTQRTHESFRMHLMNAHPESIVYSYYLSRCAKWIKTLKLHNQKLIPIFAANGTED
Ga0335005_0000394_9222_9785F033329GAGMSRDIYNSIEAINASSIKRHYTGSIQYAAGALERGAEFHRNLLETEPKDMPPNARQVFDAIMKHQMLRLIFEKSAKEITFIKEVEIDGRKVAAKGILDLHCPMYSINADIKTTSCTNLRTFAADMTKHYNHIQAVWYSYLTGFDPANFYYIGVPNKFKGELFIHRHTADEIRTAETLIRNYLVHRGL
Ga0335005_0000394_977_1312F065768GAGMSVCSPCYDAGSYVNACLTEFSFGIVEEDTLYTVWLQHNATQKIMQFEATSDGEGYITIEGIQIDPLQGYTIWVTDSAGSSVQQDITVDGDIYKCLSFSAVSVGLSPVVIP
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