NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0001299

Scaffold Ga0335005_0001299


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0001299 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19472
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F004110Metagenome452Y
F026830Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0001299_14417_14536F026830N/AMVKGETIMPVPGGEITTTEILVPVEPVVEEVEDDLPELP
Ga0335005_0001299_16043_16567F004110AGGAGMAWAMTRAADHTEDLMEPIEERRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYESATLGQLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKKGFLQLEQDDQALLRMRHHEGFTLQQIAQVLECAISTADRRCDKSLRRLQDNLGGISPWQ
Ga0335005_0001299_19287_19448F000821N/AMNEEYLKAKANLCLNQAEIDLKQEEIARAIKNLERANSALSRLFGLEGEADDN
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