NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0001827

Scaffold Ga0335005_0001827


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0001827 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16589
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (62.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F000506Metagenome / Metatranscriptome1070Y
F015995Metagenome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0001827_16069_16323F000506AGGMAKLKITRANGEVSEHRITPGIEYNFELKYGSGISKVLREHERQTEIFWLAYECLRRAGVQIPVWGVDFIDSLETVEVLDEEKK
Ga0335005_0001827_20_694F015995N/AMPAEVVGVKDVLKGLVKIDEDMRQRISVAIDPLMRGVAFKAKSYVPGNGDVLSGWAKPLSSDVGYKPFPKYDANAARQGIGYNPGKNKITKNGFQVSQYVYNVSRPGSIYEVAGRLNPQGRAPFEYRTSYGEGGTYTKKSARSKAVQAYNSNNPFASQQFIAALEPVTKQPKVKDVRASGRKTQGRLVYKAWAQDSMKVYEAIVKAINGTADNFNKTTQIKKAA
Ga0335005_0001827_8829_9143F000141N/AMMVSIWYVLSATVGNKDITIMYTKFKCNGCKRNTEFLWLDQLDTPEGFKAYQCMDCGTVGVKNIAEALDVSDGDISRCAKCGSWQFTSVVCHTCQLIGVKDANV
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