NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0005874

Scaffold Ga0335005_0005874


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0005874 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9076
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059963Metagenome133Y
F067739Metagenome125N
F070107Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0005874_1039_1281F059963GAGMNPDNVFTEWMQPIRPLRVLFQSGDSDNPNRHYIHIFALRTGGMECEYLSIDGIFIQARSRSVMFAETLIDGHWLRLGHD
Ga0335005_0005874_1278_1865F070107AGAAGGMIRVQVTDRLIFEANELLEDMSGATFKKRADYKEEHTLIGAIGEIAVIDYCWTNDLLAYKHQGLKSDVQLHSGHTIEVKVQKVTTPPEMHYCVNFGVRKNPVEKSDFFFFVHLQYVAGRPEAVWLLGGCSWDKFFRMATLHHEGEPMMRHYADGNHVPNGRYYNTDCHDLPISQLAPPSAALKHFKSLQQREEAI
Ga0335005_0005874_825_1046F067739AGGMIEYQVICMYRVGNPRKLTESQASELHTNPSIVMTLLNQDQHLDRYVKVIVDGTVAGYQTYRQGKRVTLEDIV
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