Basic Information | |
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Taxon OID | 3300034022 Open in IMG/M |
Scaffold ID | Ga0335005_0038727 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3263 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F000903 | Metagenome / Metatranscriptome | 843 | Y |
F003182 | Metagenome / Metatranscriptome | 502 | Y |
F050366 | Metagenome / Metatranscriptome | 145 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335005_0038727_1162_1344 | F003182 | AGGAG | MHILQFDCAICKKLYGKPKQRFGLKKGAELTQHEWFAQCMGCGTFGIKIVDDARIAELSQ |
Ga0335005_0038727_39_428 | F050366 | GGA | MKRWMIEDTCTSALMRVMALVMGGTEKATKEVMASVKTETAAADHDYWTTKFGEVPSYKTREEAEQADETGWAVNGVPMCAHGSMRWNQSKPDAPRAWAGYFCSEKAKEKQCKPSWYVLTSDGTFKPQV |
Ga0335005_0038727_511_705 | F000403 | GGA | MSDFVEIINPRTMTCKLMENGEIVAEYKVEQCDKCSKLVKFDSFGYQKGYDRTENIIWFCGDCR |
Ga0335005_0038727_702_1181 | F000903 | GGAG | MIDRIEEVQCMIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYEYEPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVVGNTPKMHIVGWMPVAVAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPSI |
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