NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0195248

Scaffold Ga0335005_0195248


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0195248 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1259
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F040590Metagenome161Y
F041182Metagenome / Metatranscriptome160Y
F099270Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0195248_140_406F099270AGGMSTNFQSVQAPNRKGNLSKSPAKHSGGATADCGPKHGVSGPTGQQGAPKATGNIASRNQKVQVSTHADYCGTIKNDGYMDKSVKNYLG
Ga0335005_0195248_3_110F041182N/ARAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV
Ga0335005_0195248_410_640F040590N/AMSYGKVISGGKAMTNGLTKGINNKLKSFEESHKNSLVLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPAKI
Ga0335005_0195248_650_1258F001059AGGMATYDIEALKADLPTAKDLAQFVYDKVGISLDLVGKPKEDQYMVARNALEGKKVPADFATDLNPYIDRKELIPVDEKKKIPARPADLPDPTSEVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITYQVTGPIEQIAVGERINKFGQKQPEKYSWIDPRTEEILLRRPDGTFTEKGRGVYAFCVGEKGGGIWTLIDRNLMNI
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