NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0013893

Scaffold Ga0335021_0013893


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0013893 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5421
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017989Metagenome237Y
F025268Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0013893_1251_2660F025268N/AMSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQSWPLNHTTEQKAFRFGRGFHDPCTPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTVNNEAGYDLCALRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNAGLAPFNEADPATWARLVRVPRYIKVVMEQGCAYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRMPKSKNLYGSCCEVQSYIVPENNQDCYSCAGVGDIVVPS
Ga0335021_0013893_3_230F017989N/AMALSQPCFTDLAPDQQNYNIYESLKEIAGFEIPAYDQIDISYYGSTNNIATVQYLKDGNPVATLTLTYAIQPPVTN
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