NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0173019

Scaffold Ga0335021_0173019


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0173019 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1217
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F012108Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0173019_52_429F012108N/AMINLQLTVREALTLATDSSLSGDMYDKIVTAFEVALGVNQNRTVTITGGMNTDNRISCIKAIRLHTGWGLKEAKDWSDGIVGGWKYDKWHPAPAGTKQSITLKTPEAAQNLLRDLVALGCEGHLS
Ga0335021_0173019_593_1216F000325GGAGMKVADGNEKLGKGCVVVSRPVGDTCPPDCDYLDNGCYAEQSEKMYPGVRPAGMQNLVTEKNRIRAMILDADRRKKSIRWHERGDWFLNGSLDLDYLANVTWACESILAEGKTLPDMWFYTHIYDNRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDEKIAPKRPRSKAKAEAWRKSLPKLVVLNGTKFVTCPEIRRGRGVV
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