NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334950_027834

Scaffold Ga0334950_027834


Overview

Basic Information
Taxon OID3300034028 Open in IMG/M
Scaffold IDGa0334950_027834 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 46SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1217
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068443Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334950_027834_441_1214F068443N/ALRATYRRQRKADPLASPESVRAIIDQLRDTLPDLIPHKDKDLVRMLRAVRHIHRYPATDTKRGRPGRWKREDLLKVSARLTAILERETSSHISLSSFVDHYLRLLDFPADVLEALSTGDINLFEAEQLARVGAQRLGLSQAEAKRTRAELLSAHTRARLSGERLRQRVAELLRASSSGAEAPLDNDLDRNLEDFDPYDSTHLFWDQIKQLGFALRDIRREDVRDEEIDELLRASEPVLTILARIQKRKERKTVKLEV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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