NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334953_001859

Scaffold Ga0334953_001859


Overview

Basic Information
Taxon OID3300034031 Open in IMG/M
Scaffold IDGa0334953_001859 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 49SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5538
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F011201Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0334953_001859_200_577F001042GGAGMTLTEDCPDGRSQDLTCAEADGKIVIDKMLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAQYSISNKNDTACREFSEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLVVSASEAGVNNG
Ga0334953_001859_4156_4536F011201GAGLKQSQISNKTMKKSKAKSKSGHGGARAGAGRPRCWKHRPLKLVQLPVAFVEKILEVAQYMDQNDGRLPFSEASEDLVIISGHPSKSLSGEKIKELAAREKARKLAERVMVGDEWVLVSDETFRNQH
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