 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034050 Open in IMG/M |
| Scaffold ID | Ga0335023_0000196 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36648 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (54.24%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000220 | Metagenome / Metatranscriptome | 1544 | Y |
| F014737 | Metagenome / Metatranscriptome | 260 | Y |
| F043944 | Metagenome | 155 | Y |
| F054875 | Metagenome | 139 | Y |
| F073561 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335023_0000196_13443_13925 | F073561 | GGA | MALFSKNVITQVSGFDNPLITGELVYNQRTYWNLQMTSEGAPVDLTGTTITASIVRRTVSNLIDTRNGLSFDVANYTPTPTPISLTITNQVDAQGSFTLVIDDSAWSLITTDPELDIDAVDPVCFTGRIKISFPANTPTPAQDNIIFLMFLVRSDGVVVV |
| Ga0335023_0000196_20780_21391 | F000220 | N/A | MSEEKPSDILSKVLSYADSPFKLFALLLMAVFAFSGYFIWQNQSFLFEAYKENKKLPMIADDRAEDVVAHLFKNTDATVIAIFKVNPLFGTRVLFRAYTRDGRDKTHEGLDVGLFTQSSANNRDVVALMANEMPCSEYAVAQSEIGLWYIEKGVTFGCRISVPPEQGRFVGQITVGWAKEPTDLDKAKSMLQIASTMLSKSKQ |
| Ga0335023_0000196_5552_6034 | F054875 | AGGA | MTKLGSAFGEKYQAKRKDLLTRSFVLNGHTFKVRIPLVAESDAIYKRVSDPDEQTVEKVYQEITAPLRQFENNQTEDFQFTHNDILVEGRSMREAAKNKAITEARITEFFKLLIPEMEGVSLEDLTYADIEEEFPISVQMMIVEKIGEVISPTYREARGN |
| Ga0335023_0000196_6067_6396 | F043944 | N/A | MIFNGHTLETIEELDDVTLANIQTMYADGLIGNYGILTQLATLTNGVFNYMRPANSSPYKLANILGSAYDYIYPPLTAEQQKAAVNDSLLAFMSQANGFDKTKFGVKDG |
| Ga0335023_0000196_8979_9629 | F014737 | GAG | MTTINAVTGSQINHAEFVKLTVGNAGTVYTFCNAAAPITVGGTTFSNLGALLSVGDVQRDIKATSDDMTIQLTGINPSNVALILSSDIKGSLVEVWRGFFNSNNQIITTPTTQFFKRYQGIINSVSITEDFNTDARTRIATCSISCSSMRRVLENRLSGVKTNQNNWQFIYAGDTSMNRVSEISNTFFDFGSPPKTQTQASETTVTTENSSAKEIP |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |