NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0000322

Scaffold Ga0335023_0000322


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0000322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28937
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (70.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002515Metagenome / Metatranscriptome552Y
F013527Metagenome / Metatranscriptome270Y
F034575Metagenome / Metatranscriptome174N
F035304Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0000322_18322_18471F013527AGGAGGMNNYEFNVYVTVEAESYDEAIDVFEFQLKYGINKDNVYCADIKDLGISE
Ga0335023_0000322_21289_21432F002515N/AMKKNPEELRRLMELRRSNAASAVPSKKSYNRRKCQSEMLQLKQQEGE
Ga0335023_0000322_26398_26553F035304N/AMDLNTFREYIRLHAISLEQDLENEDGADSIVPYLEGAINVSRHYLEVTNER
Ga0335023_0000322_26543_26830F034575GGAGGMNDNTTLDPYLMKLVELGMDGADILHGHLKVLMVEAEKQLDLCIEAEEYSEEAMDSMARTEASGYFDALCEVYALTYAIAFAKEEVKNRKEILGE
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