Scaffold Ga0335023

Basic Information
Taxon OID	3300034050 Open in IMG/M
Scaffold ID	Ga0335023_0001793 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034050 Open in IMG/M

Scaffold ID

Ga0335023_0001793 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13023
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (25.93%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13023

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (25.93%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F011218	Metagenome / Metatranscriptome	293	N
F014228	Metagenome	264	N
F025437	Metagenome	201	N
F043238	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335023_0001793_10596_10976	F009600	N/A	MRILDPRQLSYKIVVGKVPSLNAFYASKHWTVRAKAKTKHCQEVTLQLEQYDCEQITDVQILCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVKSLKMVHDTTITKDTAEITFTGMVVSE
Ga0335023_0001793_10949_11197	F011218	N/A	MSNDQQAKEAKQQQLSMQYYTNPAKRRKIDFILEECATLMANCDSDYQSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN
Ga0335023_0001793_11715_12122	F014228	N/A	MNSKLNPNRLAIWTILLTATLAALSSCASVKPVLESVIVRDTVIVTKTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKERKQRGWTLEGGLTMLGLILLGAYIVKRWVDKLTE
Ga0335023_0001793_5333_5515	F043238	N/A	MKYETISQLLRQLKSADISESILKDIELIEKVTLRMAYEDALLRVPFDQWYEATFKTESK
Ga0335023_0001793_8015_8428	F025437	N/A	MRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRSHASLHELGEAINKDHSSVAYAVRMHQSRLIYGDYLHYYNVACCVLEENPMATIDKPDFEGLMQELNKLNEVVVELSKYKELYLTLKKTFNEF
Ga0335023_0001793_8425_8655	F010908	GAGG	VKQIFSPFQKYECFAVDGVDYLVIDYTIIQDKDDKLVEWASEIKFKRLSDHKHYTMPITKIITNHKEGRAKHCKCK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335023_0001793

Overview

Ecosystem & Geography

Associated Families

Sequences