Basic Information | |
---|---|
Taxon OID | 3300034050 Open in IMG/M |
Scaffold ID | Ga0335023_0009370 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5735 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001731 | Metagenome | 644 | Y |
F004638 | Metagenome / Metatranscriptome | 429 | Y |
F097225 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335023_0009370_2291_3538 | F001731 | AGG | MSVFNPVWKVIIGGVEYQTAILSNLTITSGRTNIYEQAQAGYTNIELINLDQSNVIIGINDSLTIELQDSTATFIPIFGGSIVDVAISVAELGNVAYAQRVKIIALGALARLPKALTDGTLVQDFDGDQILHILQDLLLNNWGEVPAALQWNTYDPTETWANAQNTGLGEIDTPGNYELAQRASSRTDIYSLVAALATSGLGYIYENAQGQISYADSTHRSIYLATNGYVNLSANDAQGAGLTIQQRAGDVRNTITLKYGTNSTSEVDATDTTSVGLYGQLAQIFTTTVKHMADAQDQADFYLTLRAYPQYNFNQITYQLTNPEIDDADRDSLINVFMGMPLAIADLPLNMSAGTYLGFVEGWTFQAAYNEVSVALNLSPLSYSLQAMQWQDVSVAEAWNTISGILDWEHALVVA |
Ga0335023_0009370_5587_5733 | F004638 | N/A | RRPKSYAVGSLSRIVVELAIATKIPMSEWTTAEQILTAFEILEQQHGG |
Ga0335023_0009370_788_943 | F097225 | AGGAG | MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPMVTDAPKS |
⦗Top⦘ |