Basic Information | |
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Taxon OID | 3300034050 Open in IMG/M |
Scaffold ID | Ga0335023_0014772 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4574 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002287 | Metagenome / Metatranscriptome | 574 | Y |
F004838 | Metagenome / Metatranscriptome | 421 | Y |
F022872 | Metagenome | 212 | Y |
F083794 | Metagenome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335023_0014772_1619_2398 | F022872 | N/A | MSWQIPQQIEQDIIAGKAQYRSFQTGVGGQSILPVPNNAYAVVFGYDFSPAGGGLIQTDSVAADPQLIRETLRWFETQQISFYTGTDFYPFIHHVNLIQSSYYWTAENARQFSVSIDNTPIARQVYITSDKDITISVGLILDSDVASANAIPQTNRTPALLTYGGSGQAVATQTDFGPAATPIQFMQPSPKDYQDFGFGLLPNGASGQSFATPDTTRGLFDPSLYLTALGGIYRDAAACNYFLCLHYALYTRTIPEQRG |
Ga0335023_0014772_2873_3463 | F002287 | N/A | MSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTQGQTNLTQNRLDSMESMVIKTIWLGQYTTAGDLAEVGGLRQQTVSIIVGNQTVVKNLPIQFNQGTNGQAFDRLHENGGADSDLNTPATALYQRIMPVEIRLLTDIVIPPQVAFEVRLDSNQGVYGTGAIVCALSGYGKIFSAGNTF |
Ga0335023_0014772_3463_4071 | F004838 | N/A | MALSAQDKILYVANKLGLSSLNLMQGSTGAVYDVDTDISGQIFTSASRHQNPSVTNLTQNEFEVNEALLVENIAFYVKNAAGNTLNFQAVYGSNAVILFDLVIGNKRVMKETPVFASGSPYTFANVGNATTTSGEAVVQGLIPRHQVFMEGAGVLIPPQVQWYVDYRIFNVVTGATIAATDDTAIGCYLFGTRVLLNFNTSI |
Ga0335023_0014772_978_1619 | F083794 | N/A | MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQAEKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEAAPAIAVNNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGSSDYDSF |
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