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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034050 Open in IMG/M |
| Scaffold ID | Ga0335023_0014772 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4574 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002287 | Metagenome / Metatranscriptome | 574 | Y |
| F004838 | Metagenome / Metatranscriptome | 421 | Y |
| F022872 | Metagenome | 212 | Y |
| F083794 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335023_0014772_1619_2398 | F022872 | N/A | MSWQIPQQIEQDIIAGKAQYRSFQTGVGGQSILPVPNNAYAVVFGYDFSPAGGGLIQTDSVAADPQLIRETLRWFETQQISFYTGTDFYPFIHHVNLIQSSYYWTAENARQFSVSIDNTPIARQVYITSDKDITISVGLILDSDVASANAIPQTNRTPALLTYGGSGQAVATQTDFGPAATPIQFMQPSPKDYQDFGFGLLPNGASGQSFATPDTTRGLFDPSLYLTALGGIYRDAAACNYFLCLHYALYTRTIPEQRG |
| Ga0335023_0014772_2873_3463 | F002287 | N/A | MSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTQGQTNLTQNRLDSMESMVIKTIWLGQYTTAGDLAEVGGLRQQTVSIIVGNQTVVKNLPIQFNQGTNGQAFDRLHENGGADSDLNTPATALYQRIMPVEIRLLTDIVIPPQVAFEVRLDSNQGVYGTGAIVCALSGYGKIFSAGNTF |
| Ga0335023_0014772_3463_4071 | F004838 | N/A | MALSAQDKILYVANKLGLSSLNLMQGSTGAVYDVDTDISGQIFTSASRHQNPSVTNLTQNEFEVNEALLVENIAFYVKNAAGNTLNFQAVYGSNAVILFDLVIGNKRVMKETPVFASGSPYTFANVGNATTTSGEAVVQGLIPRHQVFMEGAGVLIPPQVQWYVDYRIFNVVTGATIAATDDTAIGCYLFGTRVLLNFNTSI |
| Ga0335023_0014772_978_1619 | F083794 | N/A | MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQAEKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEAAPAIAVNNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGSSDYDSF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |