NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0026229

Scaffold Ga0335023_0026229


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0026229 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3415
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009503Metagenome / Metatranscriptome317Y
F021065Metagenome / Metatranscriptome220Y
F047671Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0026229_10_150F047671N/AMAAALALYMAGVTDPKTLAMAGVAAIAPVVLRWLNPQDKSFGLTGK
Ga0335023_0026229_1806_2294F021065N/AMTLTREEEFTCHDAAIHLAKANLDYWQTRTGGYSTEKSLHDLIAQDAQSIGSEWVVAKYLNVEFDPFEQKGKTKADVGSHFEVRWTKYLAGQLIIHEYDRTDDVAILVTGESPHFFIAGWIPIAMAKRPKYRHSKQPNWWVTQINLQPIENLRRSNYGHSSV
Ga0335023_0026229_2275_2436F009503AGGAGMDTVQFECRKCKKVTKQVIHKVTDNLPNGVEVIQCTKCEVMGVAQIGTLNANL
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