NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0032524

Scaffold Ga0335023_0032524


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0032524 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3060
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046865Metagenome150Y
F054583Metagenome139Y
F070880Metagenome122N
F091450Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0032524_1051_1257F091450N/AMKSKAVLEFDYPEDENELMFALKGVDMYATLANIKLAITREFKHKADMEAALLRVRELTDEMLAELNK
Ga0335023_0032524_123_290F070880N/AMPLIGRQVRMSDLEWLMFQDLGGAEWLRTWIKKKAKFPTQHYMSKLKEQDDSKSR
Ga0335023_0032524_483_620F046865GAGGMKQLDPVTNQIRNNTLEEVAKEFDAMKNGGDTSASFAAYVRSMKK
Ga0335023_0032524_818_1042F054583AGGAMRGTGFGNVLAGNIAALRGQQRNEKRMSQKWKMCWKCQKDKSPVGGYLRIAAGLHKFICKDCMDAKEKANGEAK
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