NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0054345

Scaffold Ga0335023_0054345


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0054345 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2340
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020696Metagenome / Metatranscriptome222Y
F020908Metagenome / Metatranscriptome221Y
F097352Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0054345_1400_1618F097352N/AMKQFLASTIVNGNEIKLVKENGGYFIHWGEENRTKAIKEILTPSGRKPSQNTAHKKFLEACEATQYLKFSKL
Ga0335023_0054345_1851_2195F020908N/AMFKRFFKYTPTAQEQQFIDIVAKLLEHPKTSLRMTPLTDKYFLINEQKHYYVLLQNTGIQLTNTKFSFCKSLHPKAYDMVIENIHTHIEANRQALEDKLFRNETNMLETVLNNL
Ga0335023_0054345_264_566F020696N/AMKNLETCHHCGEQKEDCYHGFISMCLPIPEAEDKIKKWGGKEWWKNLERTDLTPEEIKELDDLSYYDQLLNTVGKGVQCNDCGKKEAELYEKYYPEPLES
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