NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334983_0034732

Scaffold Ga0334983_0034732


Overview

Basic Information
Taxon OID3300034060 Open in IMG/M
Scaffold IDGa0334983_0034732 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3311
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009265Metagenome / Metatranscriptome320Y
F009679Metagenome / Metatranscriptome314Y
F009746Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0334983_0034732_1779_2069F009265AGGMKYEITTQQGNKYEVHDDNAWLWIEIERELGYTVRQVAQKIDEGSLDVITCMLFKAAKSQGKTQMPNQQAWVTNEFDGWDVIEENPKENSQTDSSE
Ga0334983_0034732_413_985F009679GGAMALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLTFDDVSIKGVSLTSNVARFYCYDNTFVVGQALTVSKCGAPFDGSRTVTTVGKEDGVTFFEAAITNADITKRSIIPNGRAVLTSQATLYDSVPEVRESAMAVACDIWITRTGTLGQQGVDFQSSAPYRLGRSMLTRVSGLLGKHLDTRGYLG
Ga0334983_0034732_978_1349F009746AGGLANLATYRDSLAATLAAAGRVVYSYPNENITPPAIVIVPGSPYITVSAIGGARCNVRFDITCIVNAADNRAALANLETLIFSVTDLLANNISFLGGWSQPTVQQIGNADMLISQLNIEMVTTN
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