NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0000028

Scaffold Ga0334987_0000028


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0000028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119321
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)91 (53.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008402Metagenome / Metatranscriptome334Y
F014121Metagenome / Metatranscriptome265Y
F048261Metagenome / Metatranscriptome148Y
F071163Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0000028_1371_1931F048261GAGGMTEPLNHKLDVSKIKTLTDVKNVFECMSLISNVSEEHEDYELIKEYFTIPNDPQEIKFELPRKSLEEITQEFNEKIDKQVEDVKYKFEQLKYYQEYQFSKKITKIIEDIEYARENGRFPLKLTLDYSKLTATGSNITSSFVIKSGGKEVGYYTFGNGYLKYYMNKKPTAIVRFFMNKLLDFRWVDV
Ga0334987_0000028_2544_2699F071163N/AMTKTQSALERVIIELDSWCDNWTPNSYNDPRISLRQIADRARDVLEQEKND
Ga0334987_0000028_5238_5447F014121N/AMMTDAAYKVWEAFKAELIVEPTEDMKQALASSIRVISSIIYRDGVLANEPWLTHTAQELNEIAGDVEAL
Ga0334987_0000028_840_1037F008402N/AMEISTQIRIQQHEGYYYTVEDTHLDVGCEGCTISIWADGKRGEYICMDNEEALSIADAIYKLFKN

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