Basic Information | |
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Taxon OID | 3300034061 Open in IMG/M |
Scaffold ID | Ga0334987_0000808 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29696 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (31.67%) |
Novel Protein Genes | 12 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
Associated Families | 12 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001807 | Metagenome / Metatranscriptome | 631 | Y |
F007026 | Metagenome | 359 | Y |
F015587 | Metagenome | 253 | Y |
F019817 | Metagenome | 227 | Y |
F020342 | Metagenome / Metatranscriptome | 224 | Y |
F025487 | Metagenome | 201 | Y |
F029735 | Metagenome | 187 | Y |
F056536 | Metagenome | 137 | N |
F056537 | Metagenome | 137 | Y |
F087066 | Metagenome | 110 | Y |
F099220 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334987_0000808_11984_12232 | F056536 | N/A | MLCYYPYEGATERITWHGGESTMLHYQVQVDDYKGDPDWIDRYSQTLGGGIPCGTKELLAAMSDYYQYISQLHLDTMAGTIF |
Ga0334987_0000808_12326_12514 | F015587 | N/A | MTKLNIRKNIAAALFNTAVAIDNAKLPTKEDIGTKVNEYRLRAAALMMPNDMAFVIQPKQGN |
Ga0334987_0000808_16086_16328 | F019817 | N/A | MQATATPALSINQRNLYAYYLNHKKKYGNTPCFVPKLPSQSSRLEQYLQALVRLEEYGLIRVDRSSANYTAWIMLAPKST |
Ga0334987_0000808_16903_17190 | F007026 | N/A | MEQAKKYPAIDWTKNEYHQLQLVVDALKAICAREDKRHQMDEHLDPHMRNVIDEVIGMLSDELDYDPTPNEPGEPPMTMNEMHSAAWKEHQEMHR |
Ga0334987_0000808_17555_17749 | F001120 | N/A | MKKSHVSFDKTIGGFNVTERGVRSYSKSIKLGPLQVTLNARESGVRGTISIPGTGLSLPNIKLI |
Ga0334987_0000808_17978_18163 | F020342 | N/A | MSAYVDYLNMFDRINLAACAKRRATDNLLDSNRWEGEYDTARLWMKYRLIKTTTHSYIDE |
Ga0334987_0000808_18163_18423 | F001807 | N/A | MTVLAIENIVFGDHDATVTAVVDDMRLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDDLDPHWQLVDTSDYDLDS |
Ga0334987_0000808_21199_21516 | F025487 | GGGGG | MTHDTIDLDLVDKTIALIPGHAWTQVRQAIVTALVDNMPGSVIQHLTGSYDNFDRAEEILYDYYELPALSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQ |
Ga0334987_0000808_22871_23080 | F087066 | GGAG | MTENQIQFLRGSCVTILAFASTGLIAAIFLSPDEPKNNSKFEVIDQYEGCSVIRYTDPTSRWHYFLKCS |
Ga0334987_0000808_25069_25284 | F056537 | GAG | MVNDIVYINRHILSVSIDTKAMTLTYRGCKYNQEDQAKADRAWWNLAHRPWLCLTYRNICYFPYVTGGQIK |
Ga0334987_0000808_5622_6200 | F029735 | N/A | MAKDHRLALDRYIDYTKDPFLKKRQVNFDDSFASKPSSGAAPWMPSRFEQSDLLRRIQTRKLALNPGLNFVGNTPEEYEVFADIGRFVRNESYDFNEGRALTTLRPEDQPGFSPVWVEAYRISPTVNPDKRASNPMPRMANPDPKGYMMASAEKRALDEMEDNKSVAQLLDKPSAEDSKETFKKNNEKPGKA |
Ga0334987_0000808_655_960 | F099220 | N/A | MAYTTRDYLANPVQRAGDRTNFRATKEQLMGEGMSEPEAQALADEITSRKYGGGMSNAELQDFETLIGRLEQSKMKQAAQGNRARQRDVMAGGLASMMTNF |
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