NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0000808

Scaffold Ga0334987_0000808


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0000808 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29696
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (31.67%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Associated Families12

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F007026Metagenome359Y
F015587Metagenome253Y
F019817Metagenome227Y
F020342Metagenome / Metatranscriptome224Y
F025487Metagenome201Y
F029735Metagenome187Y
F056536Metagenome137N
F056537Metagenome137Y
F087066Metagenome110Y
F099220Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0000808_11984_12232F056536N/AMLCYYPYEGATERITWHGGESTMLHYQVQVDDYKGDPDWIDRYSQTLGGGIPCGTKELLAAMSDYYQYISQLHLDTMAGTIF
Ga0334987_0000808_12326_12514F015587N/AMTKLNIRKNIAAALFNTAVAIDNAKLPTKEDIGTKVNEYRLRAAALMMPNDMAFVIQPKQGN
Ga0334987_0000808_16086_16328F019817N/AMQATATPALSINQRNLYAYYLNHKKKYGNTPCFVPKLPSQSSRLEQYLQALVRLEEYGLIRVDRSSANYTAWIMLAPKST
Ga0334987_0000808_16903_17190F007026N/AMEQAKKYPAIDWTKNEYHQLQLVVDALKAICAREDKRHQMDEHLDPHMRNVIDEVIGMLSDELDYDPTPNEPGEPPMTMNEMHSAAWKEHQEMHR
Ga0334987_0000808_17555_17749F001120N/AMKKSHVSFDKTIGGFNVTERGVRSYSKSIKLGPLQVTLNARESGVRGTISIPGTGLSLPNIKLI
Ga0334987_0000808_17978_18163F020342N/AMSAYVDYLNMFDRINLAACAKRRATDNLLDSNRWEGEYDTARLWMKYRLIKTTTHSYIDE
Ga0334987_0000808_18163_18423F001807N/AMTVLAIENIVFGDHDATVTAVVDDMRLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDDLDPHWQLVDTSDYDLDS
Ga0334987_0000808_21199_21516F025487GGGGGMTHDTIDLDLVDKTIALIPGHAWTQVRQAIVTALVDNMPGSVIQHLTGSYDNFDRAEEILYDYYELPALSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQ
Ga0334987_0000808_22871_23080F087066GGAGMTENQIQFLRGSCVTILAFASTGLIAAIFLSPDEPKNNSKFEVIDQYEGCSVIRYTDPTSRWHYFLKCS
Ga0334987_0000808_25069_25284F056537GAGMVNDIVYINRHILSVSIDTKAMTLTYRGCKYNQEDQAKADRAWWNLAHRPWLCLTYRNICYFPYVTGGQIK
Ga0334987_0000808_5622_6200F029735N/AMAKDHRLALDRYIDYTKDPFLKKRQVNFDDSFASKPSSGAAPWMPSRFEQSDLLRRIQTRKLALNPGLNFVGNTPEEYEVFADIGRFVRNESYDFNEGRALTTLRPEDQPGFSPVWVEAYRISPTVNPDKRASNPMPRMANPDPKGYMMASAEKRALDEMEDNKSVAQLLDKPSAEDSKETFKKNNEKPGKA
Ga0334987_0000808_655_960F099220N/AMAYTTRDYLANPVQRAGDRTNFRATKEQLMGEGMSEPEAQALADEITSRKYGGGMSNAELQDFETLIGRLEQSKMKQAAQGNRARQRDVMAGGLASMMTNF

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