NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0001907

Scaffold Ga0334987_0001907


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0001907 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20127
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.90%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025465Metagenome201Y
F031032Metagenome / Metatranscriptome183Y
F033727Metagenome176Y
F056429Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0001907_10750_10953F033727N/AMKQQAKVLSEANELTRLMIRHYLQKHELSLNAFSKLVGIRQPNLFQFMSGKTLSSRSIEKLGEFFSK
Ga0334987_0001907_11210_11395F056429N/AMKDDLQIMGYYKNTTREQIVQIKDFKKDKLWYETIKQYETNPITEFCCSVERFKRLYIKT
Ga0334987_0001907_15454_15747F025465N/AMDELTIIKGKVLLDTTYLKIKISLEEIKQKHEHRTDLINSMERSLADLQEVKISYDGMEKELRTALQQNFRLEKLLQEEKFNNKDLELQLKMKDATL
Ga0334987_0001907_8578_8739F031032N/AMNPNKHKQDWNALRLIMKVAEINYCVFIDTKIDFMEIHAVSKDEFKDYYYNPN
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