NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0002798

Scaffold Ga0334987_0002798


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0002798 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16906
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (80.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009505Metagenome / Metatranscriptome317Y
F023253Metagenome211Y
F038004Metagenome / Metatranscriptome167Y
F079389Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0002798_2546_2773F009505AGGAGMIARIISMFMGRRLKEKAVDAVLDKVNLPDPVENAIKAAATGNVGDLLGGMGKDMAKEAVLGQITKKVPIKRPKK
Ga0334987_0002798_5315_5626F079389AGGAMAPPRRLITRDMIQAAKDQGWHLTLTAEHYGMHRSSIAAACERFGIVLPMHPFSPQRVSPKSKVWIDIVDGETKPKVKLSASPAAVERTLRRLQNEKRLQALS
Ga0334987_0002798_6615_6833F023253GGAGGMMFWRKREAVMPHRDIHAEAALGINSAAQVLPPKRFMDLVYWAIITNRQISTDDIDALANRLSRMAWERGRK
Ga0334987_0002798_7412_7582F038004GGAMDTHIVLTALWDYRETLTIVNDTAPNPQISAKIDSVDRLIESYKKSYFALDRLGIY
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