Basic Information | |
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Taxon OID | 3300034061 Open in IMG/M |
Scaffold ID | Ga0334987_0003389 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15327 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (47.37%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004134 | Metagenome / Metatranscriptome | 451 | Y |
F007919 | Metagenome / Metatranscriptome | 342 | Y |
F008358 | Metagenome / Metatranscriptome | 334 | Y |
F013889 | Metagenome / Metatranscriptome | 267 | Y |
F029435 | Metagenome / Metatranscriptome | 188 | Y |
F074911 | Metagenome / Metatranscriptome | 119 | N |
F090316 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334987_0003389_1067_1309 | F004134 | N/A | MKHPANDWDFDDTIEEAFQEWFNDLNGGFALRSEYFFGDCEVQDVNTRKDLMYKWLHSAFVVGYNMGRMEGLEVGLTNND |
Ga0334987_0003389_1306_1491 | F007919 | N/A | MTERVKFTQVSRVICPKTGIHYLDAIDENGQHWIAQMETGVERWITYKEVWKRDPQQPFD |
Ga0334987_0003389_1988_2161 | F074911 | GGAGG | MILNEEVIKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMSYYE |
Ga0334987_0003389_2356_2538 | F029435 | GGAG | MTKQELKELLTPEFLSTLHSAVECCNWKVDMIETMEFCNWCYRLAGQPEPYYDVDFEMED |
Ga0334987_0003389_3151_3282 | F090316 | N/A | MPDDLQREEEIFLKALEEYKEKKSQEPKDKTTNTLPAVIAAVL |
Ga0334987_0003389_5375_5602 | F013889 | GAGG | MSRTYRKTEGMHSGALRFPHTFNEIKKLDALLHEEDLEGLPFSGLNHIKAREHNLPTAWDDKVVSAYYQEDYHTA |
Ga0334987_0003389_5631_5876 | F008358 | GAG | MNPYYIWFIIFFCIGYLIVTDNSVARLFILLTKLAEVEYRKFKWWMVHNPMNPIVRYFMWRRSLQLAKELQEELAKKQENL |
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